Adding Subtitles to MKV

Encode the movie (paraphrasing here)

HandbrakeCLI -i orignial_movie.mkv -o  encoded_movie.mkv ....

Extract the VOBs to a 'some_subtitles' file - assuming they were track 2

mkvextract tracks original_movie.mkv  2:some_subtitles

Convert them to a .srt

vobsub2srt some_subtitles

Merge them in

mkvmerge -o encoded_movie_with_subs.mkv encoded_movie.mkv --language 0:eng --track-name 0:English some_subtitles.srt

http://superuser.com/questions/609113/how-to-add-remove-subtitles-in-an-mkv-file
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